The quote I faxed to Larry Morgan Music did not include a side mounted jack. It's not an available option on the 20th Anniversary without a plate mounted jack (and at least $300 upgrade (there are several plate styles to choose from)).
From our last conversations, I was under the impression you were not willing to evaluate a larger body shape in order to keep the tone most Phil-like. There is certainly enough room to put the electronics you want on a Rogue shape like
Susan's Purple Princess. You can switch to this template for no additional charge. If you would like a new template, that'll be $350.
The next step here is to decide what is the priority for this bass:
A. The look and sound impact of the design based on Phil's Rogue. This restricts what will fit in the bass.
B. The electronics layout. This restricts what body can be used.
C. Price. Adding more features makes the bass get more pricey.
Tell me what's most important to you and we'll work from there. Something's gotta give because I don't think all the requirements will work on one bass.