Yikes! That's really not a fun option. Not only do you have the cost of refinishing, but the new neck, inlays, inlaid logo, LEDs if you have them or want them, etc, really don't make it a good value at all, as it could approach the $4K mark really fast depending on the features.
If you absolutely love the top, or if the guitar had some certain sentimental value it might be worth it. Otherwise, it might be better to find this one a new home and have something made from the start that had exactly the specs you wanted.