Micah:
Welcome to the club. You may be a newbie, but with a name like Micah, you are certainly starting out right! (Ron & Susan Wickersham - Alembic's founders - are the parents of one Mica Wickersham-Thomas. As you progress with your custom build and hang around here, you will definitely get to know Mica).
I would advise you to proceed slowly - read a lot, ask a lot of questions. Alembics aren't inexpensive and a custom build will take time and cost a lot of money, so you want to get it right. As for the stage set up, the blade switch (like on a Strat) is easier to use on the fly than the three 3-way mini toggles on the standard Further. In fact, I've been considering modifying mine to convert to the blade style switch as I play live far more often than in the studio. One upgrade I would strongly suggest, especially if you will be playing live, is side LEDs. They are wonderful on a dark stage. Don't hesitate to ask any specific questions you may have, and enjoy the ride!
Bill, the guitar one