Whoa Nicolai, slow down and step away from the soldering iron. Ha!
This is a Series-1 correct? Power supply, stereo or mono out, etc...?
As Keith said, the first thing you should do is try adjusting
the preamp trimpots accessible through the small holes in the brass cover plate which has the board mounted to it. See the pic below (stolen from an old Mica post).
Issue # 2: Harmonics and overtones in general will be more prevalent from the bridge pickup. I can't explain the physics of that (smaller divisions of the vibrating string, something, something...) but when you add the neck pickup to the signal some of these harmonics and overtones are cancelled because that pickup is seeing the string at a different location.
#3: Level differences. Technically speaking, if the preamps were set to identical gain, the neck pickup would seem louder simply because at that point the string is moving farther and thus generating more voltage. More low frequency power is captured by the neck pickup. But your description of swapping the connections and the volume difference following means the two preamps are not set to the same gain and you need to adjust the trimpots. I run my basses with more gain on the bridge pickup than the neck pickup but you should set your levels to blend (in mono) the way YOU want to hear it.
#4: What makes you think you have a bad pickup selector switch and how did you bypass it? Again, trim pots first (did I mention the trim pots?) then you can continue to investigate the other components.
Jimmy J
