Well, that was a good approach to making the repair so something else must be in play here. We'll have to wait to hear from Mica.
Wires and switches (even from differing manufacturers) may have a minuscule amount of resistance but it is not nearly enough to effect the circuit in the way you're describing. And Alembic never compromises on the components they use so current p/u selector switches should be at least as good as the original '70's versions.
A couple questions: Out of curiosity, can you describe how the original switch failed? And, with this new strangeness, if you have chosen "neck pickup only" with the selector switch, does the treble pickup volume have any effect? In other words, can you tell if the two pickups are still operating independently or is there some "cross-talk" going on?
We'll figure it out! In the meantime, I recommend turning those volume knobs all the way up and playing that instrument!
Jimmy J