I have not worked on these for quite a while but I am going to blather on with ideas that come to mind. I don't have mine in front of me either.
The unity gain amp is supposed to provide the same level out the amp as comes in, if I read it correctly in the specs.
Can you try another 12AX7 tube to test it with?
Is the DI set up to push more signal, to get it down longer cords, etc, I wonder?
I kinda remember that the TRS output is set up to run a stereo bass in a Bi-amped mode to 2 amps at once.
Are the batteries in your bass fresh or is the blue box working correctly?
I remember that either the F-1X or the F-2B has output jacks that have open/closed contacts on them (inside the case) that may require cleaning with some fine sandpaper on occasion to work right. They are like 'points' on an old car distributer.
Is this the unit you bought from Guitar Center? If so, I think you can return used stuff within 30 days for a refund (worst case)
Anyway, I am rambling. I am sure those with more knowledge than I can come up with better info.
Best of luck,
Dave