That bass, as recorded on the Skull and Roses album, is one of my favorite bass sounds of all time. My understanding about that bass was always that it was the instrument that, in addition to the mods you mentioned, was wired with an emitter follower circuit, which (as I have read) was the first rudimentary active preamp. I could be incorrect in this. I'd love to hear from anybody with more specifics.
I don't have any more pix than Fred has in his gallery. BTW, I did the mods on the amber EBO with the Dark Star mod and macassar ebony pickguard (3 rows directly down from Phil's bass in that gallery). Its sound had a lot in common with Phil's bass, but didn't have a high mass bridge or anything active in the electronics. I sold it to finance my Brown Bass (a good decision), but never lost the itch. I recently acquired a Guild JSII (with the acorns and oak leaf carvings) and am having it outfitted with a pair of Dark Stars and a high bass bridge. I'm hoping it will complement my Alembic for some of the classic rock stuff I'm playing out lately.