Tony:
Welcome to the club. Your Fernandes was based on an Alembic Series I. (I have a guitar version of one of these that has been extensively modified with bona fide Alembic guts, among other mods). The Distillate's electronics are significantly different from Series electronics. What are you trying to accomplish? If you want the Fernandedes to be wired like it used to be, your best bet, IMHO would be to pick up a set of Series electronics from Alembic (expensive) or wait for a set on ebay (rare, but less expensive). Alternatively, you could put Distillate-type electronics in and just cover up the humcanceller route in the middle. If you tell us more precisely what you want, I'm sure there will be several members that can offer good advice.
Bill, the guitar one