I assume that alembic nuts are cut to match the finger board radius. It might complicate things a bit. My father is a machinist, and I can envision any number of ways we might have attacked this sort of problem. If I had a mill at my disposal, I would probably build a jig for the nut by drilling and tapping the proper number of holes in a plate of steel, and attaching the nut using them, flat-side up. I would then verify with a gauge attached to the Collett of the end mill that the nut was parallel to the work surface. I would then proceed to remove a modest amount of metal in several passes, until the piece was reduced to the desired thickness. This would probably be the ideal way. Short of that, I would probably use nice files as described above, or see if you couldn't order a nut blank of reduced size from alembic, cut your slots, and have it plated. Probably not the easiest solutions, but it is what comes to mind for me.