Michael,
Good going on the research. Yes neck pickups will naturally be generating more "energy" because the string at that point is moving back and forth farther than it does closer to the bridge. But our preamp boards are not "preset" to compensate for that, both channels of our boards are supposed to be identical. That's exactly what the rear panel trim controls are for, so you can balance the two levels to your liking.
Also, when "maxed out" these basses can put out nearly a line-level signal. You can actually - almost - drive a power amp without any other preamp in between. So in order to use these with "normal" pedals and amps you probably don't want to run your board wide open. And that gives you the opportunity to set the balance as you'd like. Plug in another one of your basses and set the amp at a reasonable volume. Then plug in your Series bass, neck pickup only, front volume control wide open, and use the rear panel trim pot to set a level so the volume from the amp is similar to the other bass. Then turn on both pickups and use the rear panel trim pot to dial in the amount of bridge pickup you want to balance the tone to your liking.
One other great thing about the way these axes work is that trimming the volume, either with the rear panel trimmers or the front panel volume controls, DOES NOT effect the overall tone. Unlike passive guitar circuits, the frequency response doesn't change as the volume gets lower.
Oh, and as Adriaan explained, the pickups are held in place with 4 bolts. The two whose heads you can see are holding the pickup down while the two in the opposite corners are holding the pickup up. If you wanted to raise the pickup you would loosen the top two bolts, put a small Phillips screwdriver through the two holes and turn the bolts underneath counter-clockwise until the pickup is where you want it. Then "snug" down the upper two bolts - don't over-tighten. Try to keep the pickup in the same plane as the strings. To lower the pickup, reach through the holes and turn the bolts underneath clockwise to the depth you prefer, then snug down the upper ones. Make sense?
Jimmy J